In #4683, tannewt noticed that uncrustify was not running on some
file in common-hal.
I investigated and found that it was not being run on a bunch of paths.
Rather than make incremental changes, I rewrote list_files to work
bsaed on regular expressions; these regular expressions are created from
the same git-style glob patterns.
I spot-checked some specific filenames after this change, and all looks good:
```
$ python3 tools/codeformat.py -v --dry-run tests/basics/int_small.py ports/raspberrypi/common-hal/pulseio/PulseIn.c extmod/virtpin.c tests/thread/thread_exit1.py ports/raspberrypi/background.h extmod/re1.5/recursiveloop.c
tools/codeformat.py -v --dry-run tests/basics/int_small.py ports/raspberrypi/common-hal/pulseio/PulseIn.c extmod/virtpin.c tests/thread/thread_exit1.py ports/raspberrypi/background.h extmod/re1.5/recursiveloop.c
uncrustify -c /home/jepler/src/circuitpython/tools/uncrustify.cfg -lC --no-backup extmod/virtpin.c ports/raspberrypi/background.h ports/raspberrypi/common-hal/pulseio/PulseIn.c
black --fast --line-length=99 -v tests/thread/thread_exit1.py
```
recursiveloop and int_small are excluded, while PulseIn, virtpin,
and background are included.
Testing running from a subdirectory (not _specifically_ supported though):
```
(cd ports && python3 ../tools/codeformat.py -v --dry-run raspberrypi/common-hal/pulseio/PulseIn.c ../extmod/virtpin.c)
../tools/codeformat.py -v --dry-run raspberrypi/common-hal/pulseio/PulseIn.c ../extmod/virtpin.c
uncrustify -c /home/jepler/src/circuitpython/tools/uncrustify.cfg -lC --no-backup ../extmod/virtpin.c raspberrypi/common-hal/pulseio/PulseIn.
```
As a side-effect, a bunch more files are re-formatted now. :-P
This introduces the new macro SAM_D5X_E5X. This is mostly the same
as SAMD51 before, except in a few places where a special case for
SAME54 is required
This adapts the "inline assembler" code from the UF2 bootloader, which
in turn is said to be adapted from the arduino neopixel library.
This requires the cache remain ON when using M0, and be turned OFF on M4
(determined by trial and error)
Testing performed on a Metro M4:
* measured timings using o'scope and found all values within
datasheet tolerance.
* Drove a string of 96 neopixels without visible glitches
* on-board neopixel worked
Testing performed on a Circuit Playground Express (M0):
* Color wheel code works on built-in neopixels
* Color wheel code works on 96 neopixel strip
As a bonus, this may have freed up a bit of flash on M0 targets. (2988 ->
3068 bytes free on Trinket M0)
Closes: #2297
Its slimmed down by removing the qstr and bit packing TCC info.
The trinket m0 build actually grows by 20 bytes. The arduino zero
build shrinks by 188 bytes.
1. UART: ported to ASF4. Allow rx-only and tx-only. Add .baudrate r/w property.
2. Make NeoPixel timing deterministic by turning off caches during NeoPixel writes.
3. Incorporate asf4 updates:
a. async USART driver
b. bringing Atmel START configuration closer to what we use
c. Clock initialization order now specified by CIRCUITPY_GCLK_INIT_1ST and _LAST.
4. supervisor/port.c: Move commented-out clock-test pin setting to correct location.
