Passing in a PWMOut still works but is deprecated. It will be
removed in CircuitPython 8.0.0
This also switches STM32 timer indices and channel indices to
0-based in our pin data rather than `- 1` everywhere. The latter is
more bug prone.
Most of the way for #3264
Tested on Metro M0, Metro M4, Feather S2, Feather nRF52840, Feather
STM32F4 and Arduino RP2040.
After the script stops with the exception thrown the final gc_sweep
will call any finalizers and they usually call deinit. deinit on
invalid objects can wreak havoc by changing random memory or
(hopefully) crashing. This fixes ensures the object is deinited
until initialization succeeds and the object is valid.
Do the same fix for I2C and SPI too.
Fixes#4700 and fixes#5005
This also removes the need to pin share because we don't use the
status LED while user code is running.
The status flashes fallback to the HW_STATUS LED if no RGB LED is
present. Each status has a unique blink pattern as well.
One caveat is the REPL state. In order to not pin share, we set the
RGB color once. PWM and single color will be shutoff immediately but
DotStars and NeoPixels will hold the color until the user overrides
it.
Fixes#4133
After discussing with danh, I noticed that `a/**/b` would not match `a/b`.
After correcting this and re-running "pre-commit run --all", additional
files were reindented, including the codeformat script itself.
In #4683, tannewt noticed that uncrustify was not running on some
file in common-hal.
I investigated and found that it was not being run on a bunch of paths.
Rather than make incremental changes, I rewrote list_files to work
bsaed on regular expressions; these regular expressions are created from
the same git-style glob patterns.
I spot-checked some specific filenames after this change, and all looks good:
```
$ python3 tools/codeformat.py -v --dry-run tests/basics/int_small.py ports/raspberrypi/common-hal/pulseio/PulseIn.c extmod/virtpin.c tests/thread/thread_exit1.py ports/raspberrypi/background.h extmod/re1.5/recursiveloop.c
tools/codeformat.py -v --dry-run tests/basics/int_small.py ports/raspberrypi/common-hal/pulseio/PulseIn.c extmod/virtpin.c tests/thread/thread_exit1.py ports/raspberrypi/background.h extmod/re1.5/recursiveloop.c
uncrustify -c /home/jepler/src/circuitpython/tools/uncrustify.cfg -lC --no-backup extmod/virtpin.c ports/raspberrypi/background.h ports/raspberrypi/common-hal/pulseio/PulseIn.c
black --fast --line-length=99 -v tests/thread/thread_exit1.py
```
recursiveloop and int_small are excluded, while PulseIn, virtpin,
and background are included.
Testing running from a subdirectory (not _specifically_ supported though):
```
(cd ports && python3 ../tools/codeformat.py -v --dry-run raspberrypi/common-hal/pulseio/PulseIn.c ../extmod/virtpin.c)
../tools/codeformat.py -v --dry-run raspberrypi/common-hal/pulseio/PulseIn.c ../extmod/virtpin.c
uncrustify -c /home/jepler/src/circuitpython/tools/uncrustify.cfg -lC --no-backup ../extmod/virtpin.c raspberrypi/common-hal/pulseio/PulseIn.
```
As a side-effect, a bunch more files are re-formatted now. :-P
Also found a race condition between timer_disable and redraw, which
would happen if I debugger-paused inside common_hal_rgbmatrix_timer_disable
or put a delay or print inside it. That's what pausing inside reconstruct
fixes.
So that the "right timer" can be chosen, `timer_allocate` now gets the `self`
pointer. It's guaranteed at this point that the pin information is accurate,
so you can e.g., find a PWM unit related to the pins themselves.
This required touching each port to add the parameter even though it's
unused everywhere but raspberrypi.
