In #4683, tannewt noticed that uncrustify was not running on some
file in common-hal.
I investigated and found that it was not being run on a bunch of paths.
Rather than make incremental changes, I rewrote list_files to work
bsaed on regular expressions; these regular expressions are created from
the same git-style glob patterns.
I spot-checked some specific filenames after this change, and all looks good:
```
$ python3 tools/codeformat.py -v --dry-run tests/basics/int_small.py ports/raspberrypi/common-hal/pulseio/PulseIn.c extmod/virtpin.c tests/thread/thread_exit1.py ports/raspberrypi/background.h extmod/re1.5/recursiveloop.c
tools/codeformat.py -v --dry-run tests/basics/int_small.py ports/raspberrypi/common-hal/pulseio/PulseIn.c extmod/virtpin.c tests/thread/thread_exit1.py ports/raspberrypi/background.h extmod/re1.5/recursiveloop.c
uncrustify -c /home/jepler/src/circuitpython/tools/uncrustify.cfg -lC --no-backup extmod/virtpin.c ports/raspberrypi/background.h ports/raspberrypi/common-hal/pulseio/PulseIn.c
black --fast --line-length=99 -v tests/thread/thread_exit1.py
```
recursiveloop and int_small are excluded, while PulseIn, virtpin,
and background are included.
Testing running from a subdirectory (not _specifically_ supported though):
```
(cd ports && python3 ../tools/codeformat.py -v --dry-run raspberrypi/common-hal/pulseio/PulseIn.c ../extmod/virtpin.c)
../tools/codeformat.py -v --dry-run raspberrypi/common-hal/pulseio/PulseIn.c ../extmod/virtpin.c
uncrustify -c /home/jepler/src/circuitpython/tools/uncrustify.cfg -lC --no-backup ../extmod/virtpin.c raspberrypi/common-hal/pulseio/PulseIn.
```
As a side-effect, a bunch more files are re-formatted now. :-P
Added board definition for the Sparkfun MicroMod RP2040.
Mostly followed the format for pins from the MicroMod nRF52840 board
definition, as MicroMod tries to standardize pins across
microcontrollers.
This allows more options to be overridden to 0 in an mpconfigboard.mk.
Improved:
* FRAMEBUFFERIO, FULL_BUILD, BITOPS, PWMIO, RGBMATRIX, OTARYIO, PULSEIO, WATCHDOG
Still problematic (pull requests welcome):
* RP2PIO & NEOPIXEL_WRITE, possibly only if a status neopixel is defined
* BITBANGIO, possibly only if BUSIO is enabled
* RTC
Incidentally, with RP2PIO & NEOPIXEL_WRITE, BITBANGIO, and RTC re-enabled I get
```
323956 bytes used, 720524 bytes free in flash firmware space out of 1044480 bytes (1020.0kB).
12072 bytes used, 250072 bytes free in ram for stack and heap out of 262144 bytes (256.0kB).
```
Closes#4515
