Recent changes to builtin print meant that print was printing to the
mp_sys_stdout_obj, which was sending data raw to the USB CDC device.
The data should be cooked so that \n turns into \r\n.
Blanket wide to all .c and .h files. Some files originating from ST are
difficult to deal with (license wise) so it was left out of those.
Also merged modpyb.h, modos.h, modstm.h and modtime.h in stmhal/.